Program of ISW 2017

LIST OF POSTERS >>


DAY 1   Monday | 17th July
Arrival day

14:00 – 16:00Registration
16:00 – 18:00Opening ceremony with Keynote Lectures from
Burkhard Rost
Technical University Munich, DE  
Personalized health – harnessing the power of diversity

Ruth Nussinov
NIH National Cancer Institute, USA
Protein structure, dynamics and function in signaling
18:00 – 20:30Welcome reception and dinner
20:30 –late Informal evening program (bowling, table football, swimming, etc.)

DAY 2   Tuesday | 18th July

Omics approaches to signalling
09:00 – 09:30Expert talk
Federica Di Palma
EI, Norwich, UK
Evolution of tissue-specific regulatory programs in cichlids
09:30 – 10:00Expert talk
Nataša Pržulj
UCL, London
Data-driven biomedical science
10:00 – 10:30Expert talk
Vera Van Noort
University of Loewen, Loewen,
Belgium
Post-translational modifications and small peptides on the systems-level
10:30 – 11:00Drinks break
11:00 – 11:30Expert talk
Gary Bader
Toronto University, Toronto, Canada
Using patient similarity networks and signaling pathways to predict clinical outcome
11:30 – 12:30

Selected talks

Johannes Merilahti
University of Turku, Turku, Finland
Gamma-secretase mediated proteolysis is common for receptor tyrosine kinases

 

Manjeet Kumar
EMBL, Heidelberg, Germany
Predicting novel substrates of PLK4

 

Lucia Chemes
Leloir Institute, Buenos Aires, Argentina
Analysis of cell-cycle regulatory linear motifs bound by the pRb retinoblastoma tumor suppressor

 

Eszter Ari
Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary
MulEA – A Tool for Multi Enrichment Analysis

12:30 – 14:00Lunch
Teamwork   
14:00 – 14:30Getting know each other through speed networking: project groups
14:30 – 16.00Presenting the problem to be solved: project groups
16.00 – 16.30Drinks break
16:30 – 18:30Handicrafts competition, informal discussions in the meantime
18:30 – 21:00Dinner
21:00 – 22:00Poster session 1
22:00 –late Informal evening program

 


DAY 3 Wednesday | 19th July

Modelling signalling
09:00 – 09:30Expert talk:
Evangelia Petsalaki
EMBL-EBI, Hinxton, UK
Using phosphoproteomics-derived association networks to study the Fes kinase, a tumour-suppressive oncogene
09:30 – 10:00

Expert talk:

Jasmin Fisher
Microsoft Research, Cambridge, UK
Executable models for cancer signaling
10:00 – 10:30Expert talk:
Papp Balazs
Insitute of Biochemistry, Budapest, Hungary
Underground metabolism and the predictability of evolution
10:30 – 11:00Drinks break
11:00 – 11:30Expert talk:
Andrei Zinovyev
Institute Curie, Paris, France
Systems biology of cancer
11:30 – 12:30

Selected talks

Douglas Brubaker
Massachusetts Institute of Technology, Cambridge, United States
The translation troblem: mapping insights from experimental model systems to the human in vivo context

 

Mihály Koltai
Institut Curie – Centre de Recherche, Paris, France
A data-driven logical model of colon cancer for biomarker and drug discovery

 

Kristóf Szalay
Turbine, Budapest, Hungary
Constructing simulated cells

 

Alexander Mazein
European Institute for Systems Biology and Medicine, Lyon, France
Comprehensive representation of disease-relevant signalling, metabolic and gene regulatory networks

12:30 – 14:00Lunch
 Teamwork
14:00 – 15:30Discussing the problems to be solved: project groups
15:30 – 16:00Drinks break
16:00 – 17:30Discussing the problems to be solved: project groups
17:30 – 19:30Knights tournament and medieval team building activity
19:30 – 21:30Dinner
21:30 – 22:30Poster session 2
22:30 –late Informal evening program

DAY 4 Thursday | 20th July

Chemoinformatics and signalling
09:00 – 09:30Expert talk:
Andreas Bender
University of Cambridge, Cambridge, UK
Cheminformatics of cellular signalling
09:30 – 10:00Expert talk:
Attila Reményi
Institute of Enzymology, Budapest, Hungary
Signaling complexes: structure, function and drug design
10:00 – 10:30Expert talk:
Julio Saez-Rodriguez
RWTH-Aachen University, Aachen, Germany
Signaling networks models to understand and combat cancer: from clinical genomics to mechanistic modelling
10:30 – 11:00Drinks break
11:00 – 12:30

Selected talks

Calderone Alberto
University of Rome “Tor Vergata”, Italy
Investigating the role of network motifs in signaling network

 

Fabian Froehlich
Helmholtz Zentrum München, Neuherberg, Germany
Large scale mechanistic modeling enables robust prediction of cancer cell drug response

 

Jan Baumbach
University of Southern Denmark, Odense, Denmark
Systems medicine – network-enhanced disease profiling

 

Anna Lovrics
Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest, Hungary
Mathematical modelling of epigenetic switches in cancer drug resistance

12:30 – 14:00Lunch
Teamwork  
14:00 – 15:15Working on presentations
15:15 – 16:30Presentation of teams and discussion (10 minutes/team)
16:30 – 17:00Drinks break
17:00 – 17:30Discussing group presentations, novel ideas, and concrete actions (e.g. collaborations)
17:30 – 18:30

Closing Keynote:

Toby Gibson
EMBL, Heidelberg, Germany
Regulation by Molecular Switching

18:30 – 22:00Award presention for teams and poster presenters, Closing remarks, Dinner
22:00 –late Informal evening program with music

DAY 5 Friday | 21st July
Departure day


List of posters

P-01
Dániel Kiss

Institute of Enzymology, Budapest, Hungary
A minimal ordinary differential equation model of HIF1 degradation poster Modeling

P-02
Ivan Fekete

Semmelweis University, Budapest, Hungary
Computational prediction of personalized therapies in onco-hematological malignancies poster Modeling

P-03
Agatha Treveil

Earlham Institute, Norwich, United Kingdom
Improving molecular maps to study Exopolysaccharide capsule of Bifidobacteria poster Network and systems biology

P-04
Alessandro Palma

University of Rome “Tor Vergata”, Rome, Italy
A new web portal for exploring inter- and intra-cellular interactions in muscle regeneration poster Network and systems biology

P-05
Dezső Módos

University of Cambridge – Department of Chemistry, Cambridge, United Kingdom
Resistant Escherichia coli interactome identifies putative novel combinations to break antimicrobial resistance poster Network and systems biology

P-06
Erin Oerton

University of Cambridge – Department of Chemistry Cambridge, United Kingdom
Analysis of disease relationships by integrating biological data types: A systematic evaluation poster Network and systems biology

P-07
Iryna Horak

Palladin Institute of Biochemistry of the National Academy of Sciences of Ukraine (NASU), Kyiv, Ukraine
Adaptor protein Ruk/CIN85 is a master regulator of EMT/MET in breast carcinogenesis poster network and systems biology

P-08
Liudmyla Drobot

Palladin Institute of Biochemistry, NAS of Ukraine, Kyiv, Ukraine
Adaptor protein Ruk/CIN85 is a potential reprogramming factor in breast carcinogenesis poster network and systems biology

P-09
Livia Perfetto

University of Rome “Tor Vergata”, Rome, Italy
SIGNOR, a resource to support personalized medicine in oncology poster Network and systems biology

P-10
Madhumita Bhattacharyya

Indian Institition of Chemical Biology, Kolkata, India
A system level, multiscale network analysis elucidates dynamic changes across life cycle stages of P. falciparum poster Network and systems biology

P-11
Marc Gouw

EMBL, Heidelberg, Germany
The eukaryotic linear motif database: 3000 valiated motif instances and more poster network and systems biology

P-12
Mohieddin Jafari

Pasteur Institute of Iran, Tehran, Iran
Rabies implicated signaling network; from static to dynamic modelling poster network and systems biology

P-13
Nihal Babu

Sathyabama University, Chennai, India
Bioinformatics visualization: a review on a novel technique used in the interactorium poster network and systems biology

P-14
Orsolya Kapuy

Semmelweis University, Budapest, Hungary
A systems biological study of cellular life-and-death decision in huntington’s disease poster network and systems biology

P-15
Sapan Mandloi

CSIR-Indian Institute of Chemical Biology, Kolkata, India
Analysing signalling-metabolic pathway information flow in EGF receptor-mediated oncogenesis of glioblastoma poster Network and systems biology

P-16
Gustav Sundell

Uppsala University, Uppsala, Sweden
Identification of phosphorylation switches of PDZ domain interactions using phosphomimetic phage display poster Protein domains and functions

P-17
Hugo Samano-Sanchez

EMBL, Heidelberg, Germany
Bacterial Mimicry of Eukaryotic Linear Motifs poster Protein domains and functions

P-18
Katri Vaparanta

University of Turku, Turku, Finland
The extracellular juxtamembrane domain of receptor tyrosine kinase ErbB4 is a major cleavage-independent determinant of ErbB4 JAK-STAT5 signaling selectivity poster Protein domains and functions

P-19
Mohd Shamoon Asmat

Aligarh Muslim University, Aligarh, India
Covalent interaction of protein on polyaniline-coated silver-functionalized graphene oxide nanocomposites as promising bioconjugate: activity and stability insights poster Protein domains and functions

P-20
Neha Singh

Institute of Enzymology, Budapest, Hungary
Exploration of linear motifs through which MAPKs regulate other proteins poster Protein domains and functions

P-21
Nicolas Palopoli

Universidad Nacional de Quilmes, Buenos Aires, Argentina
Identification of intrinsically disordered regions and linear motif mimicry across Flavivirus proteomes poster Protein domains and functions

P-22
Mohieddin Jafari

Pasteur Institute of Iran, Tehran, Iran
Stromal cell secretome reveals the mechanism underlying acquired doxorubicin resistance: a systems pharmacology approach poster Proteomics

until the event

Key dates

10 May 2017

  • Early registration deadline

26 May 2017

  • Early registration payment deadline

15 June 2017

  • Hotel reservation deadline

Further deadlines >>

Speakers

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Andrei Zinovyev
Institut Curie, France

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Vera Van Noort
Uni Lueven, Belgium

Julio Saez-Rodriguez
RWTH-Aachen
University, Germany

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Burkhard Rost
Technical University of
Munich, Munich, Germany
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Photo: Eckert and Heddergott ©

Attila Remenyi
Inst. of Enzymology, Hungary

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Natasa Przulj
UCL, UK

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Evangelia Petsalaki
EMBl-EBI, UK

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Balázs Papp
BRC, HAS, Hungary

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Ruth Nussinov
National Cancer Inst., USA

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Toby Gibson
EMBL, Germany

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Jasmin Fisher
Univ. of Cambridge & Microsoft Research, UK

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Federica Di Palma
Earlham Institute, UK

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Andreas Bender
University of Cambridge, UK

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Gary Bader
University of Toronto, Canada

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